gap: update to 4.12.1.

common/shlibs

@@ -4014,7 +4014,7 @@ liblinbox.so.0 linbox-1.6.3_1
 libpari-gmp-tls.so.8 pari-2.15.0_1
 libtree-sitter.so.0 tree-sitter-0.19.0_1
 libplanarity.so.0 planarity-3.0.1.1_1
-libgap.so.0 gap-4.11.1_1
+libgap.so.8 gap-4.12.0_1
 libgtkdatabox.so.1 gtkdatabox3-1.0.0_1
 libxcvt.so.0 libxcvt-0.1.1_1
 libgf2x.so.3 gf2x-1.3.0_1

srcpkgs/gap/patches/atlasrep-dont_use_network_by_default.patch

@@ -0,0 +1,11 @@
+--- a/pkg/atlasrep/gap/userpref.g	2022-09-06 17:41:17.000000000 -0300
++++ b/pkg/atlasrep/gap/userpref.g	2022-10-29 07:46:48.580833277 -0300
+@@ -46,7 +46,7 @@
+ this information depends on the value of the preference at the time \
+ when the AtlasRep package and its data extensions get loaded."
+     ],
+-  default:= true,
++  default:= false,
+   values:= [ true, false ],
+   multi:= false,
+   package:= "AtlasRep",

srcpkgs/gap/template

@@ -1,17 +1,17 @@
 # Template file for 'gap'
 pkgname=gap
-version=4.11.1
+version=4.12.1
 revision=1
 build_style=gnu-configure
-make_install_target="install-bin install-gaproot install-headers install-libgap"
 makedepends="gmp-devel zlib-devel readline-devel"
 checkdepends="perl"
 short_desc="Groups, Algorithms, Programming - computational discrete algebra"
 maintainer="Gonzalo Tornaría <tornaria@cmat.edu.uy>"
 license="GPL-2.0-or-later"
-homepage="http://www.gap-system.org/"
+homepage="https://www.gap-system.org/"
+changelog="https://raw.githubusercontent.com/gap-system/gap/master/CHANGES.md"
 distfiles="https://github.com/gap-system/gap/releases/download/v${version}/gap-${version}.tar.gz"
-checksum=6635c5da7d82755f8339486b9cac33766f58712f297e8234fba40818902ea304
+checksum=f9ebef11ee31b210ce36e3c70960742b4e253282bbd5270adc9324273c92b016
 
 if [ "$XBPS_CHECK_PKGS" = full ]; then
 	# not sure about this -- takes about 25 minutes
@@ -21,20 +21,36 @@ fi
 _GAPROOT=/usr/share/gap/
 
 # minimal required packages
-_GAPPKGS="GAPDoc primgrp SmallGrp transgrp"
+_GAPPKGS="autodoc gapdoc primgrp smallgrp transgrp"
 
 # other expected packages
-_GAPPKGS+=" atlasrep autpgrp alnuth crisp ctbllib FactInt fga irredsol laguna
- polenta polycyclic resclasses sophus tomlib"
+_GAPPKGS+=" atlasrep autpgrp alnuth crisp ctbllib factint fga irredsol laguna
+ polenta polycyclic radiroot resclasses sophus tomlib utils"
+
+post_extract() {
+	# keep around only the packages that we want to install
+	mkdir pkg.install
+	for p in ${_GAPPKGS}; do
+		mv "pkg/$p" pkg.install
+	done
+	mv pkg pkg.orig
+	mv pkg.install pkg
+}
 
 post_install() {
-	vmkdir ${_GAPROOT}/pkg
+	vmkdir ${_GAPROOT}
+	vcopy pkg ${_GAPROOT}
+}
+
+pre_check() {
+	msg_normal "Check that loading packages works\n"
 	for p in ${_GAPPKGS}; do
-		[ -d pkg/$p ] || p="$p-*"
-		vcopy "pkg/$p" ${_GAPROOT}/pkg
-	done
-	# not handled by make install-headers
-	vcopy gen/config.h /usr/include/gap
+		cat <<-EOF
+		if LoadPackage("$p") <> true then
+		    Error("loading package '$p'");
+		fi;
+		EOF
+	done | ./gap --quitonbreak -b -q -r
 }
 
 gap-devel_package() {